Added transformer encoder instead of BiLSTM

combo/modules/seq2seq_encoders/transformer_encoder.py

+from typing import Optional
+
+from overrides import overrides
+import torch
+from torch import nn
+
+from combo.modules.encoder import _EncoderBase
+from combo.config.from_parameters import FromParameters, register_arguments
+
+# from modules.seq2seq_encoders.seq2seq_encoder import Seq2SeqEncoder
+from nn.utils import add_positional_features
+
+
+# from allennlp.modules.seq2seq_encoders.seq2seq_encoder import Seq2SeqEncoder
+# from allennlp.nn.util import add_positional_features
+
+
+class TransformerEncoder(_EncoderBase, FromParameters):
+    """
+    Implements a stacked self-attention encoder similar to the Transformer
+    architecture in [Attention is all you Need]
+    (https://www.semanticscholar.org/paper/Attention-Is-All-You-Need-Vaswani-Shazeer/0737da0767d77606169cbf4187b83e1ab62f6077).
+
+    This class adapts the Transformer from torch.nn for use in AllenNLP. Optionally, it adds positional encodings.
+
+    Registered as a `Seq2SeqEncoder` with name "pytorch_transformer".
+
+    # Parameters
+
+    input_dim : `int`, required.
+        The input dimension of the encoder.
+    feedforward_hidden_dim : `int`, required.
+        The middle dimension of the FeedForward network. The input and output
+        dimensions are fixed to ensure sizes match up for the self attention layers.
+    num_layers : `int`, required.
+        The number of stacked self attention -> feedforward -> layer normalisation blocks.
+    num_attention_heads : `int`, required.
+        The number of attention heads to use per layer.
+    use_positional_encoding : `bool`, optional, (default = `True`)
+        Whether to add sinusoidal frequencies to the input tensor. This is strongly recommended,
+        as without this feature, the self attention layers have no idea of absolute or relative
+        position (as they are just computing pairwise similarity between vectors of elements),
+        which can be important features for many tasks.
+    dropout_prob : `float`, optional, (default = `0.1`)
+        The dropout probability for the feedforward network.
+    """  # noqa
+
+    def __init__(
+        self,
+        input_dim: int,
+        num_layers: int,
+        feedforward_hidden_dim: int = 2048,
+        num_attention_heads: int = 4,
+        positional_encoding: Optional[str] = None,
+        positional_embedding_size: int = 512,
+        dropout_prob: float = 0.1,
+        activation: str = "relu",
+    ) -> None:
+        super().__init__()
+
+        layer = nn.TransformerEncoderLayer(
+            d_model=input_dim,
+            nhead=num_attention_heads,
+            dim_feedforward=feedforward_hidden_dim,
+            dropout=dropout_prob,
+            activation=activation,
+        )
+        self._transformer = nn.TransformerEncoder(layer, num_layers)
+        self._input_dim = input_dim
+
+        # initialize parameters
+        # We do this before the embeddings are initialized so we get the default initialization for the embeddings.
+        for p in self.parameters():
+            if p.dim() > 1:
+                nn.init.xavier_uniform_(p)
+
+        if positional_encoding is None:
+            self._sinusoidal_positional_encoding = False
+            self._positional_embedding = None
+        elif positional_encoding == "sinusoidal":
+            self._sinusoidal_positional_encoding = True
+            self._positional_embedding = None
+        elif positional_encoding == "embedding":
+            self._sinusoidal_positional_encoding = False
+            self._positional_embedding = nn.Embedding(positional_embedding_size, input_dim)
+        else:
+            raise ValueError(
+                "positional_encoding must be one of None, 'sinusoidal', or 'embedding'"
+            )
+
+    def get_input_dim(self) -> int:
+        return self._input_dim
+
+    def get_output_dim(self) -> int:
+        return self._input_dim
+
+    def is_bidirectional(self):
+        return False
+
+    def forward(self, inputs: torch.Tensor, mask: torch.BoolTensor):
+        output = inputs
+        if self._sinusoidal_positional_encoding:
+            output = add_positional_features(output)
+        if self._positional_embedding is not None:
+            position_ids = torch.arange(inputs.size(1), dtype=torch.long, device=output.device)
+            position_ids = position_ids.unsqueeze(0).expand(inputs.shape[:-1])
+            output = output + self._positional_embedding(position_ids)
+
+        # For some reason the torch transformer expects the shape (sequence, batch, features), not the more
+        # familiar (batch, sequence, features), so we have to fix it.
+        output = output.permute(1, 0, 2)
+        # For some other reason, the torch transformer takes the mask backwards.
+        mask = ~mask
+        output = self._transformer(output, src_key_padding_mask=mask)
+        output = output.permute(1, 0, 2)
+
+        return output
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